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🏥👩🏽‍⚕️ Data Science Course Capstone Project - Healthcare domain - Diabetes Detection

This is comprehensive project completed by me as part of the Data Science Post Graduate Programme. This project includes multiple classification algorithms over a dataset collected on health/diagnostic variables to predict of a person has diabetes or not based on the data points. Apart from extensive EDA to understand the distribution and other aspects of the data, pre-processing was done to identify data which was missing or did not make sense within certain columns and imputation techniques were deployed to treat missing values. For classification the balance of classes was also reviewed and treated using SMOTE. Finally models were built using various classification algorithms and compared for accuracy on various metrics.Lastly the project contains a dashboard on the original data using Tableau.

You can view the full project code on this Github link

Note: This is an academic project completed by me as part of my Post Graduate program in Data Science from Purdue University through Simplilearn. This project was towards final course completion.

Bussiness Scenario

This dataset is originally from the National Institute of Diabetes and Digestive and Kidney Diseases. The objective of the dataset is to diagnostically predict whether or not a patient has diabetes, based on certain diagnostic measurements included in the dataset. Several constraints were placed on the selection of these instances from a larger database. In particular, all patients here are females at least 21 years old of Pima Indian heritage.

Build a model to accurately predict whether the patients in the dataset have diabetes or not.

Analysis Steps

Data cleaning and exploratory data analysis -.

histogram

There are integer as well as float data-type of variables in this dataset. Create a count (frequency) plot describing the data types and the count of variables.

count plot of data types

Check the balance of the data (to review imbalanced classes for the classification problem) by plotting the count of outcomes by their value. Review findings and plan future course of actions.

class imbalance

We notice that there is class imbalance . The diabetic class (1) is the minority class and there are 35% samples for this class. However for the non-diabetic class(0) there are 65% of the total samples present. We need to balance the data using any oversampling for minority class or undersampling for majority class. This would help to ensure the model is balanced across both classes.We can apply the SMOTE (synthetic minority oversampling technique) method for balancing the samples by oversampling the minority class (class 1 - diabetic) as we would want to ensure model more accurately predicts when an individual has diabetes in our problem.

Create scatter charts between the pair of variables to understand the relationships. Describe findings.

Pair plots

We review scatter charts for analysing inter-relations between the variables and observe the following

Perform correlation analysis. Visually explore it using a heat map.

correlation matrix plots

Observation : As mentioned in the pairplot analysis the variable Glucose has the highest correlation to outcome.

Model Building

Confusion Matrix

Note: ROC (Receiver Operating Characteristic) Curve tells us about how good the model can distinguish between two things (e.g If a patient has a disease or no). Better models can accurately distinguish between the two. Whereas, a poor model will have difficulties in distinguishing between the two. This is quantified in the AUC Score. Final Analysis Based on the classification report:

Data Reporting

Dashboard Tableau

Tools used:

This project was completed in Python using Jupyter notebooks. Common libraries used for analysis include numpy, pandas, sci-kit learn, matplotlib, seaborn, xgboost

Further Reading

🏡🏷️ california housing price prediction using linear regression in python.

Summary- The project includes analysis on the California Housing Dataset with some Exploratory data analysis . There was encoding of categorical data using the one-hot encoding present in pandas. ...

🔎📊 Principal Component Analysis with XGBoost Regression in Python

Summary- This project is based on data from the Mercedes Benz test bench for vehicles at the testing and quality assurance phase during the production cycle. The dataset consists of high number of...

💬⚙️ NLP Project - Phone Review Analysis and Topic Modeling with Latent Dirichlet Allocation in Python

Summary- This is a Natural Language Processing project which includes analysis of buyer’s reviews/comments of a popular mobile phone by Lenovo from an e-commerce website. Analysis done for the proj...

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Data Science Capstone

Skills / knowledge.

  • Hadoop framework
  • SQL database
  • Machine Learning
  • Data visualization
  • Python and R Programming
  • Data Analytics, Statistics

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John Goldsmith on scientific misconduct and the Lilienfeld study (An oldie but still relevant today)

Background to the Lilienfeld study and the “Moscow signal”:

In the early 1960s it was discovered that from 1953 the Soviets had been beaming highly focused microwaves directly into the US Embassy in Moscow at an estimated power density that ranged from .005 mW/cm2 to .018 mW/cm2.112 Averaged measurements determined that although the intensity reaching the Embassy was approximately 500 times less than the US standard for occupational exposure, it was twice the highest limit allowed in the Soviet standard.This created a quandary for the US, for if they truly believed their thermally-based 10 mW/cm2 standard was safe they could hardly conclude that the level of microwaves at their Embassy was undermining the health of the Embassy staff. Concerns were raised about the purpose of irradiation of the Embassy. Was it eavesdropping or a more sinister attack on the health of the employees? An initial study was done on the Moscow personnel in 1967 that examined a group of 43 workers, (37 exposed and 7 not exposed). They were tested for abnormalities in chromosomes and 20 out of the 37 were above the normal range among the exposed, compared to 2/7 among the non-exposed. In the final report the scientists urged a repeat and follow-up study which was clinically indicated for 18 persons, but was not undertaken by the end of the contract period, June 30, 1969. The evidence of chromosome changes was strong enough to have triggered clinical guidelines that would have recommended ceasing reproductive activity until the condition had improved. At a Superpower summit in June 1967 the irradiation of the Moscow Embassy was the subject of a confidential exchange between US President Lyndon Johnson and Soviet Prime Minister Alexi Kosygin. Johnson asked that the Soviet Union stop irradiating its Moscow Embassy with microwaves and harming the health of American citizens. In 1966 a covert study, called Project Pandora, was commenced to study the possible effects on health from the microwave irradiation of the Moscow Embassy staff, who were not told the true reason for the investigation. In a related study, Project Bizarre, a primate was exposed to microwaves at half that permitted by the US standard. The findings of this study concluded, “[t]here is no question that penetration of the central nervous system has been achieved, either directly or indirectly into that portion of the brain concerned with the changes in work functions”�.

A haematologic study by J & S Tonascia in 1976 found highly significant differences between Moscow Embassy employees and other foreign service staff (control group). White blood cell counts were much higher in the Moscow staff as well as several other significant changes noted over time. These results were never published, but obtained under the Freedom of Information Act. At this time there was a US Congressional radiation inquiry underway and the Department of Defense (DoD) was arguing that the US RF/MW Standard was already strict enough. They argued that there was no scientific evidence for the Soviet Standard being set at a level one thousand times lower than the US standard. The Moscow Embassy employees and dependants were studied for possible health effects of microwave irradiation by a team from John Hopkins University, under the direction of epidemiologist Professor Abraham Lilienfeld. Dr Lilienfeld noted that the study group was quite small and that the follow-up time too short to generally identify significant health effects such as cancer. He recommended that continued health status surveillance should be carried out, but this was not done. The incidence of sickness and death were compared with employees & dependents in other Eastern European embassies, and with the average US rates. The incidence of multiple-site cancers was far more frequent in the Moscow Embassy group than in any other population studied. It was noted that while multiple-site cancers are characteristic of older populations, the Moscow Embassy group was relatively young. According to Goldsmith, concerns of the John Hopkins team were “downgraded”� by the state department and the wording of the team report altered to lessen its impact. Lilienfeld strongly recommended that additional follow up studies be undertaken since the latency periods for some types of cancer had been insufficient for cancer to occur, if indeed it were to result from microwave exposure. Nevertheless, according to Goldsmith, the overall findings were consistent with excess cancer incidence both in the Moscow Embassy cohort and in the other Eastern European embassy personnel.Data on exposure and occurrence of some cases of cancer were withheld from Professor Lilienfeld until after his report was completed and it was too late to include in the results. Reviews of the work done by contract investigators were interpreted as inconclusive because the State Department had failed to complete the necessary follow-up work which was recommended by the Lilienfeld team.

From The Procrustean Approach , pp. 105 – 107

*******************************************************

From Iris Atzmon, June 1, 2012:

Where the trail leads… Ethical problems arising when the trail of professional work lead to evidence of cover-up of serious risk and mis-representation of scientific judgement concerning human exposures to radar

– Prof. John R. Goldsmith, M.D., M.P.H.

Epidemiology and Health Services Evaluation Unit, Faculty of Health Sciences, Ben Gurion University of the Negev, P.O.B. 653, 84105 Beer-Sheva, Israel Eubios Journal of Asian and International Bioethics 5 (1995), 92-4. Introduction

Professional interaction over fifteen years between myself, an epidemiologist, and a lawyer started in 1974, when we were both in Washington, evaluating environmental health problems. The lawyer, recently disappointed with the outcome of a case which hinged on the testimony of an epidemiologist, began a dialogue about the criteria for use of probabilities in the scientific and judicial system. We agreed on the importance of making clear these differences, and he documented them in an article.

These differences can be misused in both legal and scientific procedures, under circumstances in which the failure to demonstrate conventional statistical significance (scientifically) is erroneously interpreted as meaning that preventing exposure would not be a reasonable public health measure.

When the lawyer started his private practice he sought expert epidemiological advice in the case of foreign service workers with cancer who had been exposed to microwave radiation in the US Embassy in Moscow.

The trail then led to a major investigation of health risks of Embassy staff by a leading U.S. epidemiologist. The report of this study was said to be negative but actually had some disturbing findings. The trail took a sharp turn when the lawyer provided me copies of documents, obtained under the Freedom of Information Act, which indicated persistent cover-up and deliberate distortions of views of highly regarded scientists with respect to risks from these exposures. A published report on personnel risks from radar exposure in the U.S. Navy diluted the experience of increased leukemia in an exposed group with the low rates in a less exposed group, bringing down likelihood of a significant result and concluding that no effect occurred.

The ethical issues concern whether a scientist who inadvertently finds this evidence should disclose it, in light of security considerations among other matters. The trail, in this presentation, ends with an application of the legal use of probability in interpreting epidemiological evidence on the central scientific issue, the possible health risks from microwave radiation.

For the full paper: http://www.eubios.info/EJ54/EJ54H.htm

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Post Graduate Program In Business Analysis, Moscow

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simplilearn healthcare capstone project

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19+ skills covered.

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10+ Tools Covered

Microsoft Excel

Case Studies and Projects

Pearsons successmaker.

[Harvard Case Study] Step into shoes of the VP of Product at Pearson, to transform the product development processes to better meet the needs of customers in the education market

Pearsons Successmaker

Amazon Facing Low Customer Satisfaction in Singapore

[Harvard Case Study] As the lead analyst at the ISE, analyse customer surveys to identify the factors behind why Amazon ranked last in terms of customer satisfaction in Singapore.

Amazon Facing Low Customer Satisfaction in Singapore

PGA Golf Is Sunday Made for TV

[Harvard Case Study] Analyse a Golf tournament to identify if courses were made easier on Sunday to telecast low scores or if the pressure on the golfers raised their scores.

PGA Golf Is Sunday Made for TV

Canteen Ordering System for Unilever

Design an online portal for Unilever Canteen that enables employees to order food online to decrease employee waiting time and increase the chance of getting preferred food items.

Canteen Ordering System for Unilever

Library Management System for Stanford

Design a library management software for Stanford University to automate library activities like providing accurate information regarding any book, magazine, and research papers.

Library Management System for Stanford

WhatsApp Pay

Help WhatsApp design a business model to help at least one million users get on board with the WhatsApp Pay feature within the first three months of its launch.

WhatsApp Pay

Hospital Management System for The Mayo Clinic

Design a hospital management system for Mayo Clinic to manage and coordinate cross-departmental administrative activities like patient records, bed availability, and more.

Hospital Management System for The Mayo Clinic

Disclaimer - The projects have been built leveraging real publicly available datasets from organizations.

Program Advisors and Trainers

Program advisors.

Dr. Zhiwei Zhu

Dr. Zhiwei Zhu

With over 15 years of experience leading business analytics functions at global reinsurance companies, Dr. Zhu now uses his wealth of knowledge and business-relevant experience to provide analytics training to future business leaders at Purdue University’s Krannert School of Management.

Jeff Allen

Jeff Allen is a highly regarded project management and Agile expert with more than 15 years of experience at large companies like Compaq and HP. As an Agile Coach, he has mentored over 5000 professionals globally.

Bryan Campbell

Bryan Campbell

Bryan Campbell is a highly respected Agile Coach and Project Manager with more than 25 years of experience managing projects, programs and PMOs around the world.  He specializes in agile transformation for enterprise, scale PMOs.

Program Trainers

Junaid Javeed

Junaid Javeed

United airlines.

simplilearn healthcare capstone project

Nagraj Chepuri

Self employed.

Gagandeep Siidhu

Gagandeep Siidhu

Senior assistant vp.

simplilearn healthcare capstone project

Abhay Shukla

Senior director.

simplilearn healthcare capstone project

Manjunatha Gummaraju

At business consulting, join the business analyst industry.

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Admission Fee & Financing

The admission fee for this Business Analysis Program is € 1,990. This fee also includes all applicable program charges including Purdue Alumni Association Membership fees.

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Who are the instructors for this pg business analytics course, and how are they selected.

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What are possible career paths after completing the Post Graduate Program in Business Analysis?

After completing this post graduate in business analytics program, you can pursue job roles like business analyst, data analyst, IT analyst, and more.

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IMAGES

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  2. GitHub

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  3. Diabetes-Prediction-Using-Machine-Learning/Healthcare(Diabetes

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  4. Simplilearn Sample Project 1 Healthcare

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  5. GitHub

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  6. GitHub

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COMMENTS

  1. GitHub

    I worked on this capstone project towards completion of final assessment for PGP in Data Science course from Simplilearn-Purdue University. My job was to analyze the datasets from NIDDK consisting of several medical predictor variables and one target variable (Outcome). Predictor variables includes the number of pregnancies the patient has had ...

  2. Health Care Project of Simplilearn

    Data_Science_Capstone. Health Care Project of Simplilearn. DESCRIPTION. Problem Statement NIDDK (National Institute of Diabetes and Digestive and Kidney Diseases) research creates knowledge about and treatments for the most chronic, costly, and consequential diseases. The dataset used in this project is originally from NIDDK.

  3. Shivam12591/Healthcare-Insurance-Analysis_Capstone-Project

    Find the percentage of rows that have trivial value (for example, ?), and delete such rows if they do not contain significant information Use the necessary transformation methods to deal with the nominal and ordinal categorical variables in the dataset The dataset has State ID, which has around 16 ...

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  5. Healthcare Simplilearn Capstone Project

    Healthcare Simplilearn Capstone Project by Alexander Schmig. Details . 2 455. Healthcare Simplilearn Capstone Project . Published: Jun 29, 2021 Updated: Dec 6, 2022. English (US) Deutsch; English (UK) English (US) Español; Français (Canada) Français (France) Italiano;

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  7. Data Science Capstone

    Data Science Capstone - Healthcare The objective is to predict whether or not a patient has diabetes, based on certain diagnostic measurements included in the dataset. #simplilearn #mushtaqueViz #CapstoneProject. Published: Aug 22, 2021 Updated: Dec 7, 2022. English (US) Deutsch; English (UK) English (US)

  8. ‍⚕️ Data Science Course Capstone Project

    Summary- This is comprehensive project completed by me as part of the Data Science Post Graduate Programme. This project includes multiple classification algorithms over a dataset collected on health/diagnostic variables to predict of a person has diabetes or not based on the data points. Apart from extensive EDA to understand the distribution and other aspects of the data, pre-processing was ...

  9. 5 Data Science Projects in Healthcare that will get you hired

    Also, we will refurbish our EDA skills too with this project. Diabetes Retinopathy: It is a computer vision problem. Computer vision is widely applied in the field of healthcare and is a must-have skill for anyone wishing to apply AI in healthcare mainly because a lot of healthcare data is in the form of diagnostic images e.g. MRI's, etc.

  10. abhiii95/SimpliLearn-Capstone-Project--Healthcare

    SimpliLearn-Capstone-Project--Healthcare. DESCRIPTION. Problem Statement NIDDK (National Institute of Diabetes and Digestive and Kidney Diseases) research creates knowledge about and treatments for the most chronic, costly, and consequential diseases. The dataset used in this project is originally from NIDDK.

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    Simplilearn's Data Science Capstone project gave learners an opportunity to implement the skills learned in the Data Science certification course. Through dedicated mentoring sessions, learners understood how to solve a real-world, industry-aligned Data Science problem - from data processing and model building to reporting business results and insights. As the final step in their Data ...

  12. Best Online Data Science Course with Training ...

    Simplilearn's Data Science Capstone project will give you an opportunity to implement the skills you learned in the Data Science course. Through dedicated mentoring sessions, you'll learn how to solve a real-world, industry-aligned Data Science problem, from data processing and model building to reporting your business results and insights.

  13. Post Graduate Program in Data Science

    The data science and machine learning capstone project provides a unique opportunity to apply skills in real-world scenarios. ... finance and healthcare. For more information on what a data science professional does, refer to our article. What influence will Data Science have in 2024? ... Simplilearn's PG data science program in collaboration ...

  14. abhishekJadhav/Simplilearn-Capstone

    Data Science Capstone Project Using Python and Tableau 10. DESCRIPTION. Problem Statement NIDDK (National Institute of Diabetes and Digestive and Kidney Diseases) research creates knowledge about and treatments for the most chronic, costly, and consequential diseases.

  15. (DOC) SIMPLILEARN SampleProject1-Healthcare

    Ambika Sinha GTA, Simplilearn Project 1: Analyze the Healthcare cost and Utilization in Wisconsin hospitals Contents Business Scenario 2 Expected Outcome: 2 Workflow Description 3 R- Code for Project 3 Function Explanations 4 Analysis 5 To record the patient statistics, the agency wants to find the age category of people who frequent the hospital and has the maximum expenditure. 5 In order of ...

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